328.  Blazej, R. G., Kumaresan, P. and Mathies, R. A. Microfabricated bioprocessor for integrated nanoliter-scale Sanger DNA sequencing, PNAS 103, 7240-7245 (2006).

329.  Chandra, R. A., Douglas, E. S., Mathies, R. A., Bertozzi, C. R. and Francis, M. B. Programmable Cell Adhesion Encoded by DNA Hybridization, Angew. Chem. Int. Ed., 45, 896-901 (2006).

330.  Derbyshire E. R, Tran R., Mathies, R. A., Marletta, M. A.  Characterization of nitrosoalkane binding and activation of soluble guanylate cyclase, Biochem, 44, 16257-16265 (2005). 

331.  Bada, J. L., Sephton, M. A., Ehrenfreund, P., Mathies, R. A., Skelley, A. M. , Grunthaner,  F.  J., Zent, A. P., Quinn, R. C., Josset,  J. L., Robert, F.,  Botta, O.,  Glavin, D. P.  New strategies to detect life on Mars, Astronomy & Geophysics 46, 26-27 (2005).

332.  Grover, W. H., Ivester, R. H. C., Jensen, E. C. and Mathies, R. A.  Development and multiplexed control of latching pneumatic valves using microfluidic logical structures, Lab on a Chip 6, 623-631 (2006).

333.  Kukura, P., Yoon, S. and Mathies R. A.  Femtosecond Stimulated Raman Spectroscopy: A New Approach for Analytical Vibrtational Spectroscopy and Chemical Reaction Dynamics, Anal. Chem., invited review article in press (2006).

334.  Liu, C. N., Toriello, N. M. and Mathies, R. A.   Multichannel PCR-CE Microdevice for Genetic Analysis, Anal. Chem., 78, 5474-5479 (2006).

335.  Kukura, P., Frontiera, R. and Mathies, R. A.  Direct Observation of anharmonic coupling in the time domain with femtosecond stimulated Raman, Phys. Rev. Lett., 96, 238303 (2006).

336.  Skelley, A. M., Cleaves, H. J., Jayarajah, C. N., Bada, J. L. and Mathies, R. A. Application of the Mars Organic Analyzer to Nucleobase and Amine Biomarker Detection, Astrobiology, 6, 824-837 (2006).

337.  Shim, S. and Mathies, R. A.  Generation of narrow-bandwidth picosecond visible pulses from broadband femtosecond pulses for femtosecond stimulated Raman, App. Phys. Lett., 89 121124 (2006).

338.  Aubrey, A., Cleaves, H. J., Chalmers, J. H., Skelley, A. M., Mathies, R. A., Grunthaner, F. J., Ehrenfreund, P. and Bada, J. L.  Sulfate minerals and organic compounds on Mars, Geology, 34, 357-360 (2006).

339.  Skelley, A. M. and Mathies, R. A. Rapid On-Column Analysis of Glucosamine and its Mutarotation by Microchip Capillary Electrophoresis, J. Chromatography A, 1132, 304-309 (2006).

340.  Boon, E. M., Davis, J. H., Tran, R., Karow, D. S., Huang, S. H., Pan, D., Miazgowicz, M. M., Mathies, R. A., Marletta, M. A.  Nitric oxide binding to prokaryotic homologs of the soluble guanylate cyclase beta 1 H-NOX domain, J. Biol. Chem., 281, 21892-21902 (2006).

341.  Toriello, N. M., Lui, C. N., Mathies, R. A., Multichannel Reverse Transcription-PCR Microdevice for Rapid Gene Expression and Biomarker Analysis, Anal. Chem., 78, 7997-8003 (2006).

342.  Kukura, P., McCamanat, D. W., Mathies, R. A., Femtosecond Stimulated Raman Spectroscopy, Ann. Rev. Phys. Chem. 2007, in press (2007). 

343. Grover, W. H., Jensen, E. C., Ivester, R. H. C. and Mathies, R. A. Programmable Pneumatic Logical Circuits for Microfluidic Device Control, Micro TAS 2006, Vol. I, November 5-9, 2006, Tokyo, Japan, eds. T. Kitamori, H. Fujita, S. Hasebe, pp. 506-508.

344.   Blazej, R. G., Kumaresan, P. and Mathies, R. A.  Microfabricated Bioprocessor for Nanoliter-Scale Sanger DNA Sequencing, MicroTAS 2006, Vol. II,  November 5-9, 2006, Tokyo, Japan, eds. T. Kitamori, H. Fujita, S. Hasebe, pp. 1567-1569.

345.   Toriello, N. M., Liu, C. N. and Mathies, R. A.  Multichannel Reverse Transcription-PCR Microdevice for Rapid Multiplex Gene Expression Analysis, Micro TAS 2006, Vol. II, November 5-9, 2006, Tokyo, Japan, eds. T. Kitamori, H. Fujita, S. Hasebe, pp. 1453-1455.

346.  Skelley, A. M., Aubrey, A. D., Willis, P. A., Amashukeli, X., Ehrenfreund, P., Bada, J. L., Grunthaner, F. J. and Mathies, R. A. Organic amine biomarker detection in the Yungay region of the Atacama Desert with the Urey Instrument, J. Geophys. Res., 112, G04S11, doi:10.1029/2006JG000329 (2007). 

347.  Adesokan, A. A., Pan, D., Fredj, E., Mathies, R. A., and Gerber, R. B. Anharmonic Vibrational Calculations Modeling the Raman Spectra of Intermediates in the Protein (PYP) Photocycle, JACS 129, 4584-4594 (2007).

348.  Liu, P., Seo, T. S., Beyor, N., Shin, K., Scherer, J. R., and Mathies, R. A. Integrated Portable PCR-Capillary Electrophoresis Microsystem for Rapid Forensic Short Tandem Repeat Typing, Anal. Chem., 79, 1881-1889 (2007).

349.  Paegel, B. M., Grover, W. H., Skelley, A. M., Mathies, R. A., and Joyce, G. F. Microfluidic Serial Dilution Circuit, Anal. Chem., 78, 7522-7527 (2006).

350.  Stuart, C. S., Tauber, M. J. and Mathies. R. A.  Structure and Dynamics of the Solvated Electron in Alcohols from Resonance Raman Spectroscopy, J. Phys. Chem. 111, 8390-8400 (2007).

351.  Liu, P., Yeung, S. H. I., Seo, T. S., Shin, K.J., Beyor, N., Scherer, J. R. and Mathies, R. A., Microfabricated Genetic Analyzers for Rapid Forensic Short Tandem Repeat Typing, Proceedings of the Promega Corporation 17th International Symposium on Human ID, 2006.

352.  Jensen, E. C., Grover, W. H. and Mathies, R. A., Micropneutmatic Digital Logic Structures for Integrated Microdevice Computation and Control, Journal of Microelectromechanical Systems, 16, 1378-1385 (2007).

353.  Blazej, R. G., Kumaresan, P., Cronier, S. A. and Mathies, R. A.  In-line Injection Microdevice for Attomole-Scale Sanger DNA Sequencing, Anal. Chem., 79, 4499-4506 (2007).

354.  Emrich, C. A. and Mathies, R. A.  Microfabricated Electrophoresis Devices for High-Throughput Genetic Analysis:  Milestones and Challenges, in Handbook of Capillary and Microchip Electrophoresis and Associated Microtechniques, ed. J. P. Landers,  Third Edition (CRC Press), pp. 1277-1295 (2008).

355.  Emrich, C. A., Medintz, I. L., Chu, W. K. and Mathies, R. A., Microfabricated Two-Dimensional Electrophoresis Device for Differential Protein Expression Profiling, Analytical Chemistry 79, 7360-7366 (2007).

356.  Douglas, E. S., Toriello, N. M., Liu, C. N. and Mathies, R. A.  Advanced Microfluidic Tools for Single Cell Manipulation and Analysis, in Biological Applications of Microfluidics, ed. F. A. Gomez (Wiley-Interscience), in press 2007.

357.  Toriello, N. M., Liu, C. N., Thaitrong, N. and Mathies, R. A.  Integrated Affinity Capture, Purification and Capillary Electrophoresis Microdevice for Quantitative Double-Stranded DNA Analysis, MicroTAS 2007, October 7-11, 2007, Paris, France, Vol. I, eds. J.-L. Viovy, P. Tabeling,S. Descroix and L. Malaquin, pp. 1195-1197.

358.  Kumaresan, P., Blazej, R. G. and Mathies, R. A.  Microfabricated Droplet Generator for Single Molecule PCR in Tunable, Monodisperse Emulsions, MicroTAS 2007, October 7-11, 2007, Paris, France, Vol. I, eds. J.-L. Viovy, P. Tabeling,S. Descroix and L. Malaquin, pp.949-951.

359.  Grunthaner, F. J., Bada, J. L., Skelley, A. M., Mathies R. A., Quinn, R., Zent, A., Willis, P., Amashukeli, X., Farrington, A., Aubrey, A. and Ehrenfreund, P., The Urey Instrument: An Integrated End-to-End in situ Analytical System Designed for the Ultra-Sensitive Chemical Detection of Extant or Extinct Life on Mars, MicroTAS 2007, October 7-11, 2007, Paris, France, Vol. I, eds. J.-L. Viovy, P. Tabeling,S. Descroix and L. Malaquin, pp. 254-257.

360.  Chan, E. M., Marcus, M. A., Fakra, S., Elnaggar, M. S., Mathies, R. A. and Alivisatos, A. P. Millisecond kinetics of nanocrystal cation exchange using microfluidic X-ray absorption spectroscopy, J. Phys. Chem . A, 111, 12210-12215 (2007).

361.  Shim, S., Stuart, C. M. and Mathies, R. A.  Resonance Raman Cross-Sections and Vibronic Analysis of Rhodamine 6G from Broadband Stimulated Raman Spectroscopy, ChemPhysChem submitted 2007.

362.  Toriello, N. M., Liu, C. N., Blazej, R. G., Thaitrong, N. and Mathies, R. A.  Integrated Affinity Capture, Purification and Capillary Electrophoresis Microdevice for Quantitative Double-Stranded DNA Analysis, Anal. Chem., 79, 8549-8556 (2007).

363.  Beyor, N., Seo T. S. and Mathies, R. A.  Immunomagnetic Bead-Based Cell Concentration Microdevice for Dilute Pathogen Detection, Anal. Chem., submitted.

364.  Jayarajah, C. N., Skelley, A. M., Fortner, A. and Mathies, R. A.  Analysis of neuroactive amines in fermented beverages using a portable microchip capillary electrophoresis system, Anal. Chem, 79, 8162-8169 (2007).

365.  Frontiera, R. R. and Mathies, R. A.  Polarization dependence of vibrational coupling signals in femtosecond stimulated raman spectroscopy, J. Chem. Phys. 127, 124501 (2007).

366.  Stuart, C. M., Frontiera, R. R. and Mathies, R. A.  Excited State Structure and Dynamics of Cis-and Trans-Azobenzene from Resonance Raman Intensity Analysis, J. Phys. Chem. A 111 12072-12080 (2007).

367.  Douglas, E. S., Chandra, R. A., Bertozzi, C. R. , Mathies, R. A. and Francis, M. B.  Self-Assembled Cellular Microarrays Patterned Using DNA Barcodes, Lab-on-a-Chip, 7, 1442-1448 (2007).

368.  Greenspoon, S. A., Yeung, S. H. I., Johnson, K. R., Chu, B. S., Rhee, H. N., McGuckian, A. B., Crouse, C. A., Chiesl, T. N., Barron, A. E., Scherer, J. R., Ban, J. D. and Mathies, R. A.  A Forensic Laboratory Tests the Berkeley Microfabricated Capillary Array Electrophoresis Device, Journal of Forensic Sciences, in press.

369.  Greenspoon, S. A., Yeung, S. H. I., Ban, J. D. and Mathies, R. A.  Microchip Capillary Electrophoresis: Progress Toward an Integrated Forensic Analysis System, Profiles in DNA 10, 16-18 (2007).